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Abubacker M. N, Kirthiga B. Isolation, Characterisation and Detection of Plasmids from Chromium and Copper Resistant Bacterial Strains of Textile Effluents. Biosci Biotech Res Asia 2012;9(1). Available from: https://www.biotech-asia.org/?p=9695
Manuscript received on : 20 February 2012
Manuscript accepted on : 25 March 2012
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Isolation, Characterisation and Detection of Plasmids from Chromium and Copper Resistant Bacterial Strains of Textile Effluents

M. N. Abubacker¹* and B. Kirthiga²

¹Department of Biotechnology, National College, Tiruchirappalli - 620 001. India.

²Department of Microbiology, D.G. Vaishnav Evening College, Chennai - 600 106. India.

ABSTRACT: Chromium resistant Bacillus subtilis NCBT-012, 013 strains and copper resistant Pseudomonas fluorescens NCBT-036, 037, 038 indicator bacterial strains were isolated from textile effluents and characterised. These indicator bacterial strains have shown multiple metal as well as antibiotic resistance characters. FTIR spectroscopic analysis of unpolluted control and the strains isolated from textile effluent B. subtilis and P. fluorescens revealed alteration in the absorption frequencies of main functional carbonyl, carboxyl, amino and hydroxyl groups between them. The effluent bacterial strains B. subtilis (NCBT-012) carried a plasmid DNA having a molecular weight of 14.86 kb and P. fluorescens (NCBT-036) showed a plasmid DNA with molecular weight of 23 kb suggesting that the plasmid genes detected is responsible for chromium and copper resistant characters of these bacterial strains. Further these isolates can be exploited for safe biodegradation of textile effluents.

KEYWORDS: Bacillus subtilis (NCBT 012; 013);l Pseudomonas fluorescens (NCBT-036; 037; 038); FTIR analysis

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Abubacker M. N, Kirthiga B. Isolation, Characterisation and Detection of Plasmids from Chromium and Copper Resistant Bacterial Strains of Textile Effluents. Biosci Biotech Res Asia 2012;9(1). Available from: https://www.biotech-asia.org/?p=9695

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Abubacker M. N, Kirthiga B. Isolation, Characterisation and Detection of Plasmids from Chromium and Copper Resistant Bacterial Strains of Textile Effluents. Biosci Biotech Res Asia 2012;9(1). Available from: https://www.biotech-asia.org/?p=9695

Introduction

Pollution of the environment with toxic heavy metals is spreading throughout the world along with the industrial progress. Cadmium, Copper, chromium, nickel and zinc are known to be the most commonly used and wide spread contaminants of the environment18. The heavy metals are classified into two groups essential and non essential: essential metals required for metabolic process are as follows: Na, K, Mg, Ca, V, Se, Fe, Co, Ni, Cu, Zn and Mo. Traces of these heavy metals are necessary as co· factors of the enzymatic reaction, but high levels of them cause extreme toxicity to living organisms due to inhibition of metabolic reactions. Non essential metals such as Cd, Hg, Sn, Pb, Ag, and AI have no metabolic function and are very toxic even at very low concentration. The bioremediation of heavy metals using microorganisms has great deal of attention in recent years, not only as scientific novelty but also for its potential application in industry.

Copper is an essential micronutrient that is required in trace amounts and is involved in various redox reactions. At higher concentrations it can affect the intracellular homeostasis and produce toxic effects on bacterial growth. The toxicity of copper is proposed to involve the inactivation of bacterial essential enzymes, which are thio group proteins23. Copper resistant bacteria have been isolated from environments where copper levels are elevated due to mining, industrial and agricultural activities11. The resistant mechanism and their genetic control are responsive to the requirement to accumulate cations at trace level and at the same time reduce cytoplasmic concentration from potentially toxic levels9. In most of the bacterial isolates, the genes responsible for the metal resistance are plasmid mediated and plasmid borne copper resistance have been reported in several plant pathogenic bacteria such as Pseudomonas syringae12. Until now two copper resistant operons have been well studied i.e, cop operon present on plasmid Ppt23D isolated from Pseudomonas syringae4 and pco operon on Prj1004 isolated from E. coli8.

Chromium, well recognized for its detrimental effect on the environment, accumulates throughout the food chain, is generated from varied industries especially from leather tanning, ink and paint formation industries. Chromium is present in different oxidative forms. The most important is trivalent and hexavalent chromium. Trivalent naturally occurs in the environment as an essential nutrient2. Hexavalent chromium is a well known carcinogen17. Besides this it can also cause skin ulcer, convulsions, kidney and liver damage. To avoid such toxic effects of Cr (VI), it is exigent to convert this into Cr(III). The aim of this present work is to interpret the role of plasmids and its potential of metal toxin and antibiotic resistant characters in bacterial isolates from textile effluents.

Materials and Methods

The effluent samples were collected from three different textile industries at Tirupur in sterile bottles (Fig. 1a). Reference water sample was collected from a natural pond 2 km away industry area. Samples were transported in an ice box to the laboratory for isolation, identification, characterization, physiochemical and microbiological analyses. A portion of the effluent sample was immediately preserved for heavy metal analysis by acidifying 1.5 ml HNO3/l so that pH<2 is maintained (Fig.1b and c). After acidifying, the samples were placed at 4° C in the refrigerator to prevent the volume change due to evaporation.

Isolation of bacteria was conducted within 6 hr of collection using a serial dilution technique. The chromium and copper resistant bacteria were isolated on Nutrient agar (Hi-media) (Fig. 2) plates supplemented with different concentration of Cr as CrCl3 and Cu as CuSO4, following the standard pour plate technique1. Plates were incubated at 37° ± 2° C for 24-48 hr and the total number of bacteria was determined as CFU/ml. The effluent was diluted to 1-1000 times with sterile double distilled water and used for isolation of chromium and copper resistant bacterial strains.

Determination of Minimum Inhibitory Concentration (MIC)

MIC of the heavy metal resistant bacterial isolates grown on heavy metal incorporated media against respective heavy metal was determined by gradually increasing the concentration of heavy metal, 50 mg/ml each time on Nutrient Agar plates until the strains failed to grow colonies on the plate. The initial concentration was 50 mg/ml and the culture growing on the last concentration was transferred to the higher concentration by streaking on the plate for its confirmation. MIC was determined when the isolates failed to grow on plate24.

Determination of co-resistance to other heavy metals

Chromium and copper tolerant isolates were also studied for the tolerance to
other toxic metals. The fresh overnight Peptone water broth culture of the isolates was inoculated aseptically on Nutrient Agar and Pseudomonas Isolation Agar plates supplemented individually with other toxic metals. MIC of the isolates for the other metals was determined. The metal salts used are CdCl2, NiCl2, CoCl2, ZnS04, Pb(CH3COO)2, CuSO4 and CrCl3.19

Study of antibiotic resistance

Susceptibility to different antibiotics for the chromium and copper tolerant
isolates was determined by Disc diffusion method3. The antibiotic
impregnated disc was placed on freshly prepared lawns of each isolate on Muller Hinton Agar and examined for zone inhibition. The isolates were classified as resistant, intermediate and susceptible following the standard Antibiotic Disc Sensitivity Testing Method. Disc containing the following antibiotics (mcg) were tested: Ampicillin (l0), Chloramphenicol (30), Gentamycin (l0), Kanamycin (30), Tetracycline (30) and Streptomycin (10).

Determination of metals in the effluent sample

For analysis of metal ion concentration in the effluent, method of Clesceri et
al
. (1989)10 was adopted. Filtrate of the effluent samples (50 ml) was taken in a glass beaker, and 10 ml of concentrated HNO3 was added and kept on a hot plate for slow boiling. When the volume was reduced to 10-15 ml, 10 ml of 1 + 1 HNO3 was added and again heated till the volume was reduced to 10 ml. The solution was filtered through Whatman No. 41 filter paper and the volume of the filtrate was made upto  50 ml, by adding deionised distilled water. Digested samples were stored in polypropylene bottles at room temperature till analysis. Metal analysis was carried out using Ion Coupled ac – Optical Emission Spectrometer (ICP – OES).

Fourier transform infra red (FTIR) spectroscopy analysis – FTIR spectroscopy was used to detect vibration frequency changes in B. subtilis and P. fluorescens of unpolluted control and strains isolated from textile effluent. The spectra were collected by Perkin Elmer spectrometer with the range 4000-400 cm–1 using chloroform as mulling agent. The background obtained from the scan of pure chloroform was automatically subtracted from the sample spectra.

Isolation of plasmid DNA

Plasmid DNA was determined using a Modified Alkaline Lysis method7, 22. In the modified method, alkaline lysate was neutralized with ammonium acetate rather than potassium or sodium salts. This procedure allows the purification of plasmid DNA without the use of toxic organic solvents, CsCl centrifugation or column chromatography. Plasmid DNA was detected by electrophoresis in horizontal 0.7% agarose gel using TAE buffer (lx). 15m1 sample was loaded in each well and electrophoresis was carried out for 2 hr at 60V and the gel was stained by 0.5 mg/ml ETBr solution and observed under UV-transilluminator. The size of the plasmid DNA of the isolates was determined with E. coli V517 as marker.

Result

The bacterial population decreased with increasing concentration of chromium and copper indicating their sensitivity to higher level of concentration. The effluent has sufficient number of bacteria with its count being 1.5 ´ 103 cfu/ml. Distinct morphological colonies were selected as copper and chromium resistant. They were identified as Bacillus subtilis and Pseudomonas fluorescens based on the specific characteristics such as colonial cellular morphology, gram reaction and biochemical test. Based on the frequency of occurrence Chromium resistant B. subtilis designated as NCBT-012 and NCBT-013, and three different P. fluorescens isolates of copper resistant, designated as NCBT-036, 037 and 038. All the bacterial isolates showed multiple metal resistance and the results were tabulated (Table 1).

Table 1: Cr and Cu resistant bacterial strains showing multiple metal resistance.

Bacterial isolates Minimum inhibitory of concentration (mg)
CdCl2 NiCl2 CoCl2 ZnSO4 Pb(CH3COO)2 CuSO4 CrCl3
Bacillus

subtilis

NCBT-012

120 200 190 390 90 300 160
Bacillus

subtilis

NCBT-013

210 250 250 370 170 190 110
Pseudomonas

fluorescens

NCBT-036

120 180 180 460 130 180 130
Pseudomonas

fluorescens

NCBT-037

80 110 160 340 110 220 140
Pseudomonas

fluorescens

NCBT-038

90 140 210 410 90 180 110

NCBT-012 showed the highest resistance to CuSO4 (300 mg), CrCl3 (160 mg), while NCBT-013 showed lower resistance, i.e., 190 mg of CuSO4 and 110 mg of CrCl3. Among the copper resistant strain NCBT-037 showed the highest resistance towards CuSO4 (220 mg) and CrCl3 (140 mg) whereas NCBT-036 and NCBT-038 showed lower resistance. As toxic metal resistance is linked with antibiotic resistance in microorganisms, the isolated Chromium resistant strain NCBT-012 and copper resistant strain NCBT-037 showed resistance towards Streptomycin, Gentamycin and Kanamycin whereas NCBT-037 showed resistance to Ampicillin; NCBT-036 showed resistance to Ampicillin, Tetracycline and Streptomycin; NCBT-038 against Gentamycin and Kanamycin (Table 2).

Table 2: Antibiotic sensitivity profile of Cr and Cu resistant bacterial isolates.

Antibiotics Disc content

(mcg)

Diameter of inhibition zone (mm) of isolates
NCBT-012 NCBT-013 NCBT-036 NCBT-037 NCBT-038
Ampicillin 10 16.0 (I) 10.0 (R) NI (R) 20.0 (S) 17.0 (I)
Tetracycline 30 40.0 (S) 36.0 (S) NI (R) 30.0 (S) 33.0 (S)
Streptomycin 10 NI (R) 14.0 (I) NI (R) NI (R) 12.0 (I)
Gentamycin 10 10.0 (R) 26.0 (S) 20.0 (S) 6.0 (R) 8.0 (R)
Chloramphenicol 30 14.0 (I) 28.0 (S) 18.0 (S) 20.0 (S) 16.0 (I)
Kanamycin 30 NI (R) 24.0 (S) 20.0 (S) 12.0 (R) NI (R)

Note: I: Intermittent; R: Resistant; S: Sensitive; NI: No inhibition

FTIR functional group analysis

The functional groups involved in absorption of chromium by B. subtilis NCBT-012 and the control B. subtilis as well as absorption of copper by P. fluorescens NCBT-037. The main functional groups involved in absorption process were found to be carbonyl, carboxyl, amino and hydroxyl groups for B. subtilis and P. fluorescens control organisms (Fig. 3a and 4a). Involvement of these functional group in metal absorption process could be judged from change in frequency of absorbing groups (Fig. 3b and 4b). The absorbance of the peaks of carbonyl frequency 3433.14 is changed to 3402.92, for carboxyl frequency 1599.68 to 1745.58, for amino frequency 1362.84 to 1380.21 whereas for hydroxyl group frequency 1085.00 is changed to 1034.90 for B. subtilis (NCBT-012) chromium resistant strain. For P. fluorescens the absorbance peaks of carbonyl frequency 3416.98 is changed to 3402.92, carboxyl 1608.73 is shifted to 1745.58, amino frequency 1363.26 is changed to 1380.21 and hydroxyl group frequency 1080.77 is shifted to 1034.90.

A single band of plasmid DNA with the molecular weight of 14.86 kb was isolated from Chromium resistant NCBT-012 and Copper resistant NCBT-037 showed the molecular weight of 23.0 kb. The data of metal concentration in the textile effluent are furnished in Table 3. Analytical results revealed the average concentration of Cr and Cu in the effluent as 2.38 mg/l and 0.01 mg/l (Fig. 5).

Table 3: Concentration of metals in textile effluent

Metals Concentration in textile effluent (mg/l)
Cr 2.38
Cu 0.01
Pb ND
Zn 3.43
Co ND
Ni 0.245
Cd 0.018

Note: ND: Not detected

Discussion

Textile effluents heavily polluted with heavy metals viz. chromium, copper, zinc, nickel and cadmium provide a natural source for the isolation of heavy metal resistant bacteria. The present study highlights the prevalent occurrence of a chromium and copper tolerant microbial population in textile effluents and their antibiotic resistance. The metal resistance was studied in a basal medium because the complexation with the heavy metal is minimum: therefore the shown metal concentration is approximately the free metal concentration14. The chromium and copper resistant isolates showed multiple metal resistance (Table-1) and suggests the prior exposure of these isolates to the metals which are present in the effluent (sampling site) and this phenomenon of multiple metal resistance has been reported by Silver and Misra (1988)21 in Pseudomonas sp. Chromium resistant NCBT-012 and copper resistant NCBT-037 were resistant to antibiotics like Streptomycin, Gentamycin and Kanamycin which matches the study of Duxbury and Bicknell (1983)13. The present work reveals a strong relationship between resistance to antibiotics and heavy metals which correlates with the study of Novick and Roth (1968)16. Although resistance to metal ions is of less clinical concern than resistance to antibiotics, such association is significant. Knowledge of resistance to metal ions may provide useful information on the mechanism of antibiotic resistance, plasmid genetics, physiology and ecology of microbes in the polluted environment20. Genes encoding resistance to metals and antibiotics were located on transmissible plasmids. The prevalence of such metal tolerant microorganisms is ecologically important, particularly if they are also antibiotic resistant. Under environmental condition of metal stress, those resistant populations will adapt faster by the spread of R Factor than by mutation and natural selection, thus leading to a very rapid increase in their number5. Thus plasmids also assist the bacteria to acquire tolerance and resistance mechanism against heavy metals and other toxic substances in the polluted environment. For instance, the incidence of 14.86 Kb plasmid in B. subtilis and 23.0 Kb plasmid in P. fluorescens was significantly higher in textile effluent polluted water than in the same bacteria isolated from non-pollutant water, the study is in agreement with the report of Boronin (1992)6. The wide spread use of metal and the discriminate disposal of byproducts and wastes from industries have created serious environmental issues15. The industrial effluents are the enriched medium to propagate and spread microbial population which are resistant to multiple metal ions.

From the present study, it is to be concluded that B. subtilis strains NCBT-012 and P. fluorescens NCBT-37 isolated from textile effluents can be efficiently used for bioremediation process with minimum cost and high efficiency and also to establish more number of genetically modified strains.

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